Learning Probabilistic Graphical Models in R

Learning Probabilistic Graphical Models in R

Author: David Bellot

Publisher: Packt Publishing Ltd

Published: 2016-04-29

Total Pages: 250

ISBN-13: 1784397415

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Familiarize yourself with probabilistic graphical models through real-world problems and illustrative code examples in R About This Book Predict and use a probabilistic graphical models (PGM) as an expert system Comprehend how your computer can learn Bayesian modeling to solve real-world problems Know how to prepare data and feed the models by using the appropriate algorithms from the appropriate R package Who This Book Is For This book is for anyone who has to deal with lots of data and draw conclusions from it, especially when the data is noisy or uncertain. Data scientists, machine learning enthusiasts, engineers, and those who curious about the latest advances in machine learning will find PGM interesting. What You Will Learn Understand the concepts of PGM and which type of PGM to use for which problem Tune the model's parameters and explore new models automatically Understand the basic principles of Bayesian models, from simple to advanced Transform the old linear regression model into a powerful probabilistic model Use standard industry models but with the power of PGM Understand the advanced models used throughout today's industry See how to compute posterior distribution with exact and approximate inference algorithms In Detail Probabilistic graphical models (PGM, also known as graphical models) are a marriage between probability theory and graph theory. Generally, PGMs use a graph-based representation. Two branches of graphical representations of distributions are commonly used, namely Bayesian networks and Markov networks. R has many packages to implement graphical models. We'll start by showing you how to transform a classical statistical model into a modern PGM and then look at how to do exact inference in graphical models. Proceeding, we'll introduce you to many modern R packages that will help you to perform inference on the models. We will then run a Bayesian linear regression and you'll see the advantage of going probabilistic when you want to do prediction. Next, you'll master using R packages and implementing its techniques. Finally, you'll be presented with machine learning applications that have a direct impact in many fields. Here, we'll cover clustering and the discovery of hidden information in big data, as well as two important methods, PCA and ICA, to reduce the size of big problems. Style and approach This book gives you a detailed and step-by-step explanation of each mathematical concept, which will help you build and analyze your own machine learning models and apply them to real-world problems. The mathematics is kept simple and each formula is explained thoroughly.


Book Synopsis Learning Probabilistic Graphical Models in R by : David Bellot

Download or read book Learning Probabilistic Graphical Models in R written by David Bellot and published by Packt Publishing Ltd. This book was released on 2016-04-29 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Familiarize yourself with probabilistic graphical models through real-world problems and illustrative code examples in R About This Book Predict and use a probabilistic graphical models (PGM) as an expert system Comprehend how your computer can learn Bayesian modeling to solve real-world problems Know how to prepare data and feed the models by using the appropriate algorithms from the appropriate R package Who This Book Is For This book is for anyone who has to deal with lots of data and draw conclusions from it, especially when the data is noisy or uncertain. Data scientists, machine learning enthusiasts, engineers, and those who curious about the latest advances in machine learning will find PGM interesting. What You Will Learn Understand the concepts of PGM and which type of PGM to use for which problem Tune the model's parameters and explore new models automatically Understand the basic principles of Bayesian models, from simple to advanced Transform the old linear regression model into a powerful probabilistic model Use standard industry models but with the power of PGM Understand the advanced models used throughout today's industry See how to compute posterior distribution with exact and approximate inference algorithms In Detail Probabilistic graphical models (PGM, also known as graphical models) are a marriage between probability theory and graph theory. Generally, PGMs use a graph-based representation. Two branches of graphical representations of distributions are commonly used, namely Bayesian networks and Markov networks. R has many packages to implement graphical models. We'll start by showing you how to transform a classical statistical model into a modern PGM and then look at how to do exact inference in graphical models. Proceeding, we'll introduce you to many modern R packages that will help you to perform inference on the models. We will then run a Bayesian linear regression and you'll see the advantage of going probabilistic when you want to do prediction. Next, you'll master using R packages and implementing its techniques. Finally, you'll be presented with machine learning applications that have a direct impact in many fields. Here, we'll cover clustering and the discovery of hidden information in big data, as well as two important methods, PCA and ICA, to reduce the size of big problems. Style and approach This book gives you a detailed and step-by-step explanation of each mathematical concept, which will help you build and analyze your own machine learning models and apply them to real-world problems. The mathematics is kept simple and each formula is explained thoroughly.


Graphical Models with R

Graphical Models with R

Author: Søren Højsgaard

Publisher: Springer Science & Business Media

Published: 2012-02-22

Total Pages: 187

ISBN-13: 146142299X

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Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.


Book Synopsis Graphical Models with R by : Søren Højsgaard

Download or read book Graphical Models with R written by Søren Højsgaard and published by Springer Science & Business Media. This book was released on 2012-02-22 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.


Mastering Probabilistic Graphical Models Using Python

Mastering Probabilistic Graphical Models Using Python

Author: Ankur Ankan

Publisher: Packt Publishing Ltd

Published: 2015-08-03

Total Pages: 284

ISBN-13: 1784395218

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Master probabilistic graphical models by learning through real-world problems and illustrative code examples in Python About This Book Gain in-depth knowledge of Probabilistic Graphical Models Model time-series problems using Dynamic Bayesian Networks A practical guide to help you apply PGMs to real-world problems Who This Book Is For If you are a researcher or a machine learning enthusiast, or are working in the data science field and have a basic idea of Bayesian Learning or Probabilistic Graphical Models, this book will help you to understand the details of Graphical Models and use it in your data science problems. This book will also help you select the appropriate model as well as the appropriate algorithm for your problem. What You Will Learn Get to know the basics of Probability theory and Graph Theory Work with Markov Networks Implement Bayesian Networks Exact Inference Techniques in Graphical Models such as the Variable Elimination Algorithm Understand approximate Inference Techniques in Graphical Models such as Message Passing Algorithms Sample algorithms in Graphical Models Grasp details of Naive Bayes with real-world examples Deploy PGMs using various libraries in Python Gain working details of Hidden Markov Models with real-world examples In Detail Probabilistic Graphical Models is a technique in machine learning that uses the concepts of graph theory to compactly represent and optimally predict values in our data problems. In real world problems, it's often difficult to select the appropriate graphical model as well as the appropriate inference algorithm, which can make a huge difference in computation time and accuracy. Thus, it is crucial to know the working details of these algorithms. This book starts with the basics of probability theory and graph theory, then goes on to discuss various models and inference algorithms. All the different types of models are discussed along with code examples to create and modify them, and also to run different inference algorithms on them. There is a complete chapter devoted to the most widely used networks Naive Bayes Model and Hidden Markov Models (HMMs). These models have been thoroughly discussed using real-world examples. Style and approach An easy-to-follow guide to help you understand Probabilistic Graphical Models using simple examples and numerous code examples, with an emphasis on more widely used models.


Book Synopsis Mastering Probabilistic Graphical Models Using Python by : Ankur Ankan

Download or read book Mastering Probabilistic Graphical Models Using Python written by Ankur Ankan and published by Packt Publishing Ltd. This book was released on 2015-08-03 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: Master probabilistic graphical models by learning through real-world problems and illustrative code examples in Python About This Book Gain in-depth knowledge of Probabilistic Graphical Models Model time-series problems using Dynamic Bayesian Networks A practical guide to help you apply PGMs to real-world problems Who This Book Is For If you are a researcher or a machine learning enthusiast, or are working in the data science field and have a basic idea of Bayesian Learning or Probabilistic Graphical Models, this book will help you to understand the details of Graphical Models and use it in your data science problems. This book will also help you select the appropriate model as well as the appropriate algorithm for your problem. What You Will Learn Get to know the basics of Probability theory and Graph Theory Work with Markov Networks Implement Bayesian Networks Exact Inference Techniques in Graphical Models such as the Variable Elimination Algorithm Understand approximate Inference Techniques in Graphical Models such as Message Passing Algorithms Sample algorithms in Graphical Models Grasp details of Naive Bayes with real-world examples Deploy PGMs using various libraries in Python Gain working details of Hidden Markov Models with real-world examples In Detail Probabilistic Graphical Models is a technique in machine learning that uses the concepts of graph theory to compactly represent and optimally predict values in our data problems. In real world problems, it's often difficult to select the appropriate graphical model as well as the appropriate inference algorithm, which can make a huge difference in computation time and accuracy. Thus, it is crucial to know the working details of these algorithms. This book starts with the basics of probability theory and graph theory, then goes on to discuss various models and inference algorithms. All the different types of models are discussed along with code examples to create and modify them, and also to run different inference algorithms on them. There is a complete chapter devoted to the most widely used networks Naive Bayes Model and Hidden Markov Models (HMMs). These models have been thoroughly discussed using real-world examples. Style and approach An easy-to-follow guide to help you understand Probabilistic Graphical Models using simple examples and numerous code examples, with an emphasis on more widely used models.


Graphical Models, Exponential Families, and Variational Inference

Graphical Models, Exponential Families, and Variational Inference

Author: Martin J. Wainwright

Publisher: Now Publishers Inc

Published: 2008

Total Pages: 324

ISBN-13: 1601981848

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The core of this paper is a general set of variational principles for the problems of computing marginal probabilities and modes, applicable to multivariate statistical models in the exponential family.


Book Synopsis Graphical Models, Exponential Families, and Variational Inference by : Martin J. Wainwright

Download or read book Graphical Models, Exponential Families, and Variational Inference written by Martin J. Wainwright and published by Now Publishers Inc. This book was released on 2008 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: The core of this paper is a general set of variational principles for the problems of computing marginal probabilities and modes, applicable to multivariate statistical models in the exponential family.


Machine Learning for Hackers

Machine Learning for Hackers

Author: Drew Conway

Publisher: "O'Reilly Media, Inc."

Published: 2012-02-13

Total Pages: 324

ISBN-13: 1449330533

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If you’re an experienced programmer interested in crunching data, this book will get you started with machine learning—a toolkit of algorithms that enables computers to train themselves to automate useful tasks. Authors Drew Conway and John Myles White help you understand machine learning and statistics tools through a series of hands-on case studies, instead of a traditional math-heavy presentation. Each chapter focuses on a specific problem in machine learning, such as classification, prediction, optimization, and recommendation. Using the R programming language, you’ll learn how to analyze sample datasets and write simple machine learning algorithms. Machine Learning for Hackers is ideal for programmers from any background, including business, government, and academic research. Develop a naïve Bayesian classifier to determine if an email is spam, based only on its text Use linear regression to predict the number of page views for the top 1,000 websites Learn optimization techniques by attempting to break a simple letter cipher Compare and contrast U.S. Senators statistically, based on their voting records Build a “whom to follow” recommendation system from Twitter data


Book Synopsis Machine Learning for Hackers by : Drew Conway

Download or read book Machine Learning for Hackers written by Drew Conway and published by "O'Reilly Media, Inc.". This book was released on 2012-02-13 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: If you’re an experienced programmer interested in crunching data, this book will get you started with machine learning—a toolkit of algorithms that enables computers to train themselves to automate useful tasks. Authors Drew Conway and John Myles White help you understand machine learning and statistics tools through a series of hands-on case studies, instead of a traditional math-heavy presentation. Each chapter focuses on a specific problem in machine learning, such as classification, prediction, optimization, and recommendation. Using the R programming language, you’ll learn how to analyze sample datasets and write simple machine learning algorithms. Machine Learning for Hackers is ideal for programmers from any background, including business, government, and academic research. Develop a naïve Bayesian classifier to determine if an email is spam, based only on its text Use linear regression to predict the number of page views for the top 1,000 websites Learn optimization techniques by attempting to break a simple letter cipher Compare and contrast U.S. Senators statistically, based on their voting records Build a “whom to follow” recommendation system from Twitter data


Building Probabilistic Graphical Models with Python

Building Probabilistic Graphical Models with Python

Author: Kiran R. Karkera

Publisher:

Published: 2014

Total Pages: 172

ISBN-13: 9781306902878

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"This is a short, practical guide that allows data scientists to understand the concepts of Graphical models and enables them to try them out using small Python code snippets, without being too mathematically complicated. If you are a data scientist who knows about machine learning and want to enhance your knowledge of graphical models, such as Bayes network, in order to use them to solve real-world problems using Python libraries, this book is for you.This book is intended for those who have some Python and machine learning experience, or are exploring the machine learning field."


Book Synopsis Building Probabilistic Graphical Models with Python by : Kiran R. Karkera

Download or read book Building Probabilistic Graphical Models with Python written by Kiran R. Karkera and published by . This book was released on 2014 with total page 172 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This is a short, practical guide that allows data scientists to understand the concepts of Graphical models and enables them to try them out using small Python code snippets, without being too mathematically complicated. If you are a data scientist who knows about machine learning and want to enhance your knowledge of graphical models, such as Bayes network, in order to use them to solve real-world problems using Python libraries, this book is for you.This book is intended for those who have some Python and machine learning experience, or are exploring the machine learning field."


Probabilistic Graphical Models

Probabilistic Graphical Models

Author: Luis Enrique Sucar

Publisher: Springer Nature

Published: 2020-12-23

Total Pages: 370

ISBN-13: 3030619435

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This fully updated new edition of a uniquely accessible textbook/reference provides a general introduction to probabilistic graphical models (PGMs) from an engineering perspective. It features new material on partially observable Markov decision processes, causal graphical models, causal discovery and deep learning, as well as an even greater number of exercises; it also incorporates a software library for several graphical models in Python. The book covers the fundamentals for each of the main classes of PGMs, including representation, inference and learning principles, and reviews real-world applications for each type of model. These applications are drawn from a broad range of disciplines, highlighting the many uses of Bayesian classifiers, hidden Markov models, Bayesian networks, dynamic and temporal Bayesian networks, Markov random fields, influence diagrams, and Markov decision processes. Topics and features: Presents a unified framework encompassing all of the main classes of PGMs Explores the fundamental aspects of representation, inference and learning for each technique Examines new material on partially observable Markov decision processes, and graphical models Includes a new chapter introducing deep neural networks and their relation with probabilistic graphical models Covers multidimensional Bayesian classifiers, relational graphical models, and causal models Provides substantial chapter-ending exercises, suggestions for further reading, and ideas for research or programming projects Describes classifiers such as Gaussian Naive Bayes, Circular Chain Classifiers, and Hierarchical Classifiers with Bayesian Networks Outlines the practical application of the different techniques Suggests possible course outlines for instructors This classroom-tested work is suitable as a textbook for an advanced undergraduate or a graduate course in probabilistic graphical models for students of computer science, engineering, and physics. Professionals wishing to apply probabilistic graphical models in their own field, or interested in the basis of these techniques, will also find the book to be an invaluable reference. Dr. Luis Enrique Sucar is a Senior Research Scientist at the National Institute for Astrophysics, Optics and Electronics (INAOE), Puebla, Mexico. He received the National Science Prize en 2016.


Book Synopsis Probabilistic Graphical Models by : Luis Enrique Sucar

Download or read book Probabilistic Graphical Models written by Luis Enrique Sucar and published by Springer Nature. This book was released on 2020-12-23 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: This fully updated new edition of a uniquely accessible textbook/reference provides a general introduction to probabilistic graphical models (PGMs) from an engineering perspective. It features new material on partially observable Markov decision processes, causal graphical models, causal discovery and deep learning, as well as an even greater number of exercises; it also incorporates a software library for several graphical models in Python. The book covers the fundamentals for each of the main classes of PGMs, including representation, inference and learning principles, and reviews real-world applications for each type of model. These applications are drawn from a broad range of disciplines, highlighting the many uses of Bayesian classifiers, hidden Markov models, Bayesian networks, dynamic and temporal Bayesian networks, Markov random fields, influence diagrams, and Markov decision processes. Topics and features: Presents a unified framework encompassing all of the main classes of PGMs Explores the fundamental aspects of representation, inference and learning for each technique Examines new material on partially observable Markov decision processes, and graphical models Includes a new chapter introducing deep neural networks and their relation with probabilistic graphical models Covers multidimensional Bayesian classifiers, relational graphical models, and causal models Provides substantial chapter-ending exercises, suggestions for further reading, and ideas for research or programming projects Describes classifiers such as Gaussian Naive Bayes, Circular Chain Classifiers, and Hierarchical Classifiers with Bayesian Networks Outlines the practical application of the different techniques Suggests possible course outlines for instructors This classroom-tested work is suitable as a textbook for an advanced undergraduate or a graduate course in probabilistic graphical models for students of computer science, engineering, and physics. Professionals wishing to apply probabilistic graphical models in their own field, or interested in the basis of these techniques, will also find the book to be an invaluable reference. Dr. Luis Enrique Sucar is a Senior Research Scientist at the National Institute for Astrophysics, Optics and Electronics (INAOE), Puebla, Mexico. He received the National Science Prize en 2016.


Bayesian Networks

Bayesian Networks

Author: Marco Scutari

Publisher: CRC Press

Published: 2021-07-28

Total Pages: 275

ISBN-13: 1000410382

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Explains the material step-by-step starting from meaningful examples Steps detailed with R code in the spirit of reproducible research Real world data analyses from a Science paper reproduced and explained in detail Examples span a variety of fields across social and life sciences Overview of available software in and outside R


Book Synopsis Bayesian Networks by : Marco Scutari

Download or read book Bayesian Networks written by Marco Scutari and published by CRC Press. This book was released on 2021-07-28 with total page 275 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explains the material step-by-step starting from meaningful examples Steps detailed with R code in the spirit of reproducible research Real world data analyses from a Science paper reproduced and explained in detail Examples span a variety of fields across social and life sciences Overview of available software in and outside R


Graphical Models

Graphical Models

Author: Christian Borgelt

Publisher: John Wiley & Sons

Published: 2009-07-30

Total Pages: 404

ISBN-13: 9780470749562

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Graphical models are of increasing importance in applied statistics, and in particular in data mining. Providing a self-contained introduction and overview to learning relational, probabilistic, and possibilistic networks from data, this second edition of Graphical Models is thoroughly updated to include the latest research in this burgeoning field, including a new chapter on visualization. The text provides graduate students, and researchers with all the necessary background material, including modelling under uncertainty, decomposition of distributions, graphical representation of distributions, and applications relating to graphical models and problems for further research.


Book Synopsis Graphical Models by : Christian Borgelt

Download or read book Graphical Models written by Christian Borgelt and published by John Wiley & Sons. This book was released on 2009-07-30 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graphical models are of increasing importance in applied statistics, and in particular in data mining. Providing a self-contained introduction and overview to learning relational, probabilistic, and possibilistic networks from data, this second edition of Graphical Models is thoroughly updated to include the latest research in this burgeoning field, including a new chapter on visualization. The text provides graduate students, and researchers with all the necessary background material, including modelling under uncertainty, decomposition of distributions, graphical representation of distributions, and applications relating to graphical models and problems for further research.


Introduction to Graphical Modelling

Introduction to Graphical Modelling

Author: David Edwards

Publisher: Springer Science & Business Media

Published: 2012-12-06

Total Pages: 342

ISBN-13: 1461204933

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A useful introduction to this topic for both students and researchers, with an emphasis on applications and practicalities rather than on a formal development. It is based on the popular software package for graphical modelling, MIM, freely available for downloading from the Internet. Following a description of some of the basic ideas of graphical modelling, subsequent chapters describe particular families of models, including log-linear models, Gaussian models, and models for mixed discrete and continuous variables. Further chapters cover hypothesis testing and model selection. Chapters 7 and 8 are new to this second edition and describe the use of directed, chain, and other graphs, complete with a summary of recent work on causal inference.


Book Synopsis Introduction to Graphical Modelling by : David Edwards

Download or read book Introduction to Graphical Modelling written by David Edwards and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 342 pages. Available in PDF, EPUB and Kindle. Book excerpt: A useful introduction to this topic for both students and researchers, with an emphasis on applications and practicalities rather than on a formal development. It is based on the popular software package for graphical modelling, MIM, freely available for downloading from the Internet. Following a description of some of the basic ideas of graphical modelling, subsequent chapters describe particular families of models, including log-linear models, Gaussian models, and models for mixed discrete and continuous variables. Further chapters cover hypothesis testing and model selection. Chapters 7 and 8 are new to this second edition and describe the use of directed, chain, and other graphs, complete with a summary of recent work on causal inference.